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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8254232_8255344_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8254232 - 8255344
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
RFKDLSFLDLYAHPEDQKFH
Intron Amino Acid Position:
1554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.1
0.7
0.9
81.2
36.5
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000027231
8252960 - 8308584
55625