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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8259061_8259878_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8259061 - 8259878
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
PPAQELLDEIEYLKQQDSIT
Intron Amino Acid Position:
1400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
66
38.4
Major BPS
79.2
0.72
1
75
40
Major PPT
83.7
0.76
0.9
81
35.4
Minor 5ss
30.9
-2.2
3.3
38.6
41
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000027231
8252960 - 8308584
55625