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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8264151_8264948_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8264151 - 8264948
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATAAA
5'SS Class:
major
3'SS Sequence:
TCCCTCACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCCCTCACT
Flanking Amino Acid:
VNQLSHMPVASGEAAQELIS
Intron Amino Acid Position:
1232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
76.5
34.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.1
0.48
0.8
62.8
33.1
Minor 5ss
33
-1.9
3
41.3
45.3
Minor BPS
68.8
0.67
2.1
92.91
35.6

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000027231
8252960 - 8308584
55625