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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8266948_8268300_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8266948 - 8268300
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGACATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTAGCCTAATG
Flanking Amino Acid:
ERRMRQPEWRRRSCQSPSQY
Intron Amino Acid Position:
1050

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
61.8
0.27
1
51.9
42.4
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
49.5
-0.1
2.2
64.83
43.1

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021571
8252960 - 8308584
55625