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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8267761_8268300_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8267761 - 8268300
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAGAT
U12 Branch Point Sequence:
TGTTGCGCAGGC
Flanking Amino Acid:
ERRMRQPEWRNEVKQMAKRV
Intron Amino Acid Position:
1010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
49.5
-0
1.3
46.4
47
Major PPT
82.6
0.73
0.8
80.5
31.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
35.3
-1.1
2.6
51.01
45.8

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000027231
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625