About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8268381_8268882_R


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
8268381 - 8268882

Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTG|GTAAGTTTT

5'SS Class:
strong_major

3'SS Sequence:
TGATTTATCATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGTAAT

U12 Branch Point Sequence:
TTGTCTTGTAAT

Flanking Amino Acid:
SAASGSEEERWCYPKSASEI

Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.3
0.97
0.8
89.6
24.1

Major BPS
84.4
0.85
1.1
84
34.5

Major PPT
71.1
0.48
0.9
66.1
39.4

Minor 5ss
46.3
-0.4
2.8
64.1
41.5

Minor BPS
50
0.08
1.9
73.83
43

Associated Gene:

Gene:
TEX14

Ensembl Gene ID:

Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8252960 - 8308584
55625

8252960 - 8308584
55625

8252960 - 8308584
55625

8252960 - 8282257
29298

8252960 - 8308584
55625

8252960 - 8308584
55625