Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_82686_95544_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82686 - 95544

Intron Length:

12859

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

AGGTTCTGAACC

Flanking Amino Acid:

SADLRIRKTQHSTLSRKFVE

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.02

0.7

87.4

21.4

Major BPS

82.1

0.8

71.6

36.4

Major PPT

82.8

0.74

0.7

Minor 5ss

39.3

-1.2

2.9

45.2

Minor BPS

62.1

0.36

1.4

66.29

38.9

Associated Gene:

Gene:

STX1A

Ensembl Gene ID:

ENSAPLG00000006044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006280

60795 - 139656

78862