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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8268990_8269769_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8268990 - 8269769
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
GGACTCGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
ACGTGCTGAATC
Flanking Amino Acid:
LDNQEGLDREHLLPRVSVRC
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
66.9
0.38
1
61.8
44.2
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
49
-0
1.9
57.14
42

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000027231
8252960 - 8308584
55625