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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8271674_8272376_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8271674 - 8272376
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATGCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGACATAAAA
Flanking Amino Acid:
FCTVMQEALTETLPWKGVED
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
1
69.5
41.4
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
47.8
-0.1
2
63.86
41.6

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000027231
8252960 - 8308584
55625
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625