About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8274848_8275286_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8274848 - 8275286
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTGTTATAACT
Flanking Amino Acid:
DLLIAEQEHSSKLRHPHLLQ
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
85.6
0.8
0.7
80.2
25
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
63.6
0.5
1.7
83.99
37.1

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625