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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8277877_8281704_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8277877 - 8281704
Intron Length:
3828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ACCTATATAATC
Flanking Amino Acid:
CVKVKKLLKKGTFVDAVNSM
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.6
0.8
0.7
81.6
30.5
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
47.2
-0.2
1.7
54.04
38.3

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000009406
8252960 - 8282257
29298
ENSAPLT00000027231
8252960 - 8308584
55625
ENSAPLT00000021571
8252960 - 8308584
55625