Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8280247_8282358_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8280247 - 8282358

Intron Length:

2112

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCG|GCCTGCCGG

5'SS Class:

weak_major

3'SS Sequence:

GCGGTATGCAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCGGTAT

U12 Branch Point Sequence:

GCGGCGGTATGC

Flanking Amino Acid:

HRGHTAREVGSLPLGP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.1

0.17

1.4

40.5

45.4

Major BPS

40.5

-0.5

1.5

43.8

Major PPT

-0.3

1.7

41.6

42.3

Minor 5ss

28.9

-2.4

3.9

39.3

Minor BPS

29.6

-1.5

2.5

33.54

42.1

Associated Gene:

Gene:

RAD51C

Ensembl Gene ID:

ENSAPLG00000014623

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015256

8280227 - 8296387

16161