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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8281958_8300013_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8281958 - 8300013
Intron Length:
18056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
GTTCTCTCATCA
Flanking Amino Acid:
CTSRKPWGCNMVPEEGAATA
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
76.1
0.59
0.9
74.8
34.8
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
50.3
0.01
1.8
65.83
40.2

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000039575
8252960 - 8308584
55625
ENSAPLT00000027231
8252960 - 8308584
55625