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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8282469_8283594_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8282469 - 8283594
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGGCA
5'SS Class:
major
3'SS Sequence:
TTGTCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGATTT
Flanking Amino Acid:
LDTGPCGLSREIGISKEEAL
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60
39.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.7
0.6
0.8
70
36.5
Minor 5ss
27.5
-2.6
3.7
38.3
46.9
Minor BPS
52
0.14
2
76.82
39.5

Associated Gene:

Gene:
RAD51C
Ensembl Gene ID:
ENSAPLG00000014623
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015256
8280227 - 8296387
16161