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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8283854_8284057_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8283854 - 8284057
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTTCCCATGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTCCCATGACA
Flanking Amino Acid:
GAPGVGKTQLCMQLAVDVQI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
71.2
34.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.8
0.54
1
69.6
35.4
Minor 5ss
48.2
-0.2
2.5
63.7
43
Minor BPS
68.8
0.59
1.6
81.67
32.5

Associated Gene:

Gene:
RAD51C
Ensembl Gene ID:
ENSAPLG00000014623
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015256
8280227 - 8296387
16161