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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8284225_8285091_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8284225 - 8285091
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATCTATT
Flanking Amino Acid:
QLIAEAHQEEDHQKALETFS
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.5
0.75
0.8
81.6
34.6
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
49.2
0.02
2.1
74.85
41.8

Associated Gene:

Gene:
RAD51C
Ensembl Gene ID:
ENSAPLG00000014623
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015256
8280227 - 8296387
16161