About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8285226_8287635_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8285226 - 8287635
Intron Length:
2410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTGTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
LPDFLSEHSKVRLVVIDGIA
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
56
0.14
1.7
68.5
42.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
RAD51C
Ensembl Gene ID:
ENSAPLG00000014623
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015256
8280227 - 8296387
16161