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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8287778_8293624_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8287778 - 8293624
Intron Length:
5847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGCTTA
5'SS Class:
major
3'SS Sequence:
TTATGTTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATGTTACCC
Flanking Amino Acid:
ANDHKSAVSLGESWGHAATV
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
65.9
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.3
0.52
1
66.1
44.2
Minor 5ss
45.6
-0.5
3.2
55.1
49.1
Minor BPS
49.3
-0
2.3
70.24
41.4

Associated Gene:

Gene:
RAD51C
Ensembl Gene ID:
ENSAPLG00000014623
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015256
8280227 - 8296387
16161