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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8300102_8307796_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8300102 - 8307796
Intron Length:
7695

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACT|GCAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCCGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTCTTTTGAATC
Flanking Amino Acid:
SHKPRENAYHCRLRGFISVL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.5
82.5
33.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
61.9
0.27
1.7
69
37
Minor 5ss
32.9
-2
4
55.7
41.6
Minor BPS
56.1
0.17
1.4
61.75
38.7

Associated Gene:

Gene:
TEX14
Ensembl Gene ID:
ENSAPLG00000009018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027231
8252960 - 8308584
55625
ENSAPLT00000021571
8252960 - 8308584
55625
ENSAPLT00000021417
8252960 - 8308584
55625
ENSAPLT00000018986
8252960 - 8308584
55625
ENSAPLT00000039575
8252960 - 8308584
55625