About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8314_8876_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8314 - 8876
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTTTCTCCATT
Flanking Amino Acid:
LGFMGLVLLLVASWWCFWKP
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
69.2
0.48
1
61
37.1
Major PPT
76.5
0.6
0.7
69.5
31.2
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
53.1
0.18
2
75.15
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024958
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020589
5055 - 8928
3874