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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8368243_8369453_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8368243 - 8369453
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCCTCCATT
Flanking Amino Acid:
ERFVQKAARESLRCGTTGVV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.3
35.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.3
0.66
0.8
72.7
30.6
Minor 5ss
26.7
-2.7
3
31.1
43
Minor BPS
65.7
0.57
2
88.16
37.4

Associated Gene:

Gene:
PPM1E
Ensembl Gene ID:
ENSAPLG00000014545
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024210
8308958 - 8371439
62482
ENSAPLT00000015162
8308958 - 8371302
62345