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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8374649_8377528_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8374649 - 8377528
Intron Length:
2880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTAGACCAATC
Flanking Amino Acid:
LSFVNGEDNTRTLPG*
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
40
-0.7
2.3
57.59
40.9

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014924
8374633 - 8403209
28577