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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8377095_8377528_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8377095 - 8377528
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCTTTGAACC
Flanking Amino Acid:
LSFVNGEDNTR*
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.9
0.49
1
66.7
43.1
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
66.4
0.49
1.4
76.33
33.2

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047138
8376403 - 8403209
26807