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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8377412_8377528_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8377412 - 8377528
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AAATGTTCATCT
Flanking Amino Acid:
LSFVNGEDNTR*
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.7
0.69
0.8
77.5
30.8
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
44.1
-0.3
2.1
60.68
42.8

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039388
8377344 - 8403209
25866