About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8378556_8380178_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8378556 - 8380178
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
SEGASAGPEEGGACQKHVLH
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.5
0.87
0.7
85.2
29.1
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350
ENSAPLT00000014924
8374633 - 8403209
28577
ENSAPLT00000047138
8376403 - 8403209
26807