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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8381108_8381599_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8381108 - 8381599
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TGCGCTTTGAGC
Flanking Amino Acid:
RLKGDSQTSEGGLGSSKSSS
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
84.4
0.77
0.7
83.2
25.1
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
49.1
-0
1.8
57.55
42.1

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047138
8376403 - 8403209
26807
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350
ENSAPLT00000014924
8374633 - 8403209
28577