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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8385575_8386321_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8385575 - 8386321
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AACTCTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTGTCCATAACT
Flanking Amino Acid:
AAAAATPGASGTSHGYTSAS
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
68.7
0.42
0.8
66.4
34.7
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
78.4
0.97
1.5
93.22
34.9

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014924
8374633 - 8403209
28577
ENSAPLT00000047138
8376403 - 8403209
26807
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350