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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8389008_8389536_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8389008 - 8389536
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATTATTAATC
Flanking Amino Acid:
ELSAGLPETSKYEYRVEMVH
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.2
0.75
0.8
79.8
32.1
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
62
0.36
1.6
69
36.1

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014924
8374633 - 8403209
28577
ENSAPLT00000047138
8376403 - 8403209
26807
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350