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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8393293_8395352_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8393293 - 8395352
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
ESLLQEVEHQLRSCSKSELI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
79.8
35.1
Major BPS
76.8
0.67
1
66
40.9
Major PPT
76.3
0.59
0.9
72.9
31.9
Minor 5ss
34
-1.8
2.8
42.1
44.6
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047138
8376403 - 8403209
26807
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350
ENSAPLT00000014924
8374633 - 8403209
28577