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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8395421_8396537_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8395421 - 8396537
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTTCTTTAAAC
Flanking Amino Acid:
QLKNKLITLMGQKTSLTQET
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
75.2
0.77
1.3
79.33
36

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350
ENSAPLT00000014924
8374633 - 8403209
28577
ENSAPLT00000047138
8376403 - 8403209
26807