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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8398853_8399750_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8398853 - 8399750
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTATTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
LTKHEENEKDKCENHHEKLS
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
68.5
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.1
0.5
1.7
85.7
33.4
Minor 5ss
33.1
-1.9
3.3
39.8
44.1
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047138
8376403 - 8403209
26807
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350
ENSAPLT00000014924
8374633 - 8403209
28577