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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8402354_8403188_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8402354 - 8403188
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TGTGGCTTAACA
Flanking Amino Acid:
MDEQSVESIAEVFRCFI
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
66.6
39.6
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
85.1
0.79
0.8
76.9
36.8
Minor 5ss
31.2
-2.1
3.3
41.1
45.6
Minor BPS
65.1
0.47
1.9
75.93
41.5

Associated Gene:

Gene:
TRIM37
Ensembl Gene ID:
ENSAPLG00000014211
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039388
8377344 - 8403209
25866
ENSAPLT00000020798
8370860 - 8403209
32350
ENSAPLT00000014924
8374633 - 8403209
28577
ENSAPLT00000047138
8376403 - 8403209
26807