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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8405590_8405981_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8405590 - 8405981
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTATTTTAATT
Flanking Amino Acid:
SGSVVPSSVEESKFKPLTEE
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.5
0.73
0.8
81.5
35.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
69.9
0.7
1.2
79.53
37.3

Associated Gene:

Gene:
SKA2
Ensembl Gene ID:
ENSAPLG00000014130
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014720
8404341 - 8411241
6901