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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8431613_8433328_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8431613 - 8433328
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGATGTTTAATT
Flanking Amino Acid:
APLQITLTPQVQPGPPPCPV
Intron Amino Acid Position:
908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
63.1
0.49
1.7
77.22
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013932
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014511
8427560 - 8433526
5967