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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8439197_8443355_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8439197 - 8443355
Intron Length:
4159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCTTTGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TGTGGTTCAAGG
Flanking Amino Acid:
NLENTMAAFHHAVNIGTDML
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
60.3
0.26
1
65.5
28
Major PPT
85.3
0.79
0.8
76.9
37.3
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
41.2
-0.8
2.2
47.55
45.9

Associated Gene:

Gene:
GDPD1
Ensembl Gene ID:
ENSAPLG00000013798
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014417
8434980 - 8450097
15118