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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8446233_8447313_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8446233 - 8447313
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAA
U12 Branch Point Sequence:
AAATTAGAAACT
Flanking Amino Acid:
YEVVSKCLKENADIPIIFCL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
61.2
0.28
1
58.8
38.1
Major PPT
76.1
0.59
0.9
69.7
36.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
41.9
-0.5
2.3
61.19
42.2

Associated Gene:

Gene:
GDPD1
Ensembl Gene ID:
ENSAPLG00000013798
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014417
8434980 - 8450097
15118