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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8447448_8448570_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8447448 - 8448570
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTTCTTCAACA
Flanking Amino Acid:
LEIPMPSIILKLKEPQKMSR
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.8
33
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
80.7
0.69
0.8
77.3
30
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
72.3
0.7
1.5
79.34
37.2

Associated Gene:

Gene:
GDPD1
Ensembl Gene ID:
ENSAPLG00000013798
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014417
8434980 - 8450097
15118