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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8448631_8449252_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8448631 - 8449252
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
CTCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAACA
Flanking Amino Acid:
SQKFIIWLADTLLMRKALFD
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
81.6
33.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
87.7
0.85
0.7
83.2
25.1
Minor 5ss
45.3
-0.5
3.1
64.7
40
Minor BPS
80.3
0.95
1.2
88.35
28.3

Associated Gene:

Gene:
GDPD1
Ensembl Gene ID:
ENSAPLG00000013798
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014417
8434980 - 8450097
15118