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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8481425_8482196_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8481425 - 8482196
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GATGCACTAACA
Flanking Amino Acid:
SQGRAYLFNSVVNVGCGPAE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
67.9
37.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
87.6
0.85
0.7
80.2
31.8
Minor 5ss
33.5
-1.9
2.7
39.1
38.9
Minor BPS
48.7
-0.1
2
63.81
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018497
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031614
8481354 - 8483334
1981