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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8482306_8483244_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8482306 - 8483244
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CCTTCCTTATCG
Flanking Amino Acid:
NCKTTLGWKYEHAFESSQKY
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
88.6
0.87
0.6
87.2
23.3
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
65.5
0.35
1.8
66.83
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018497
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031614
8481354 - 8483334
1981