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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8494125_8494204_F

Intron Information:

Intron Rank:
126737
Intron Class:
major
Intron Phase:
Intron Coordinates:
8494125 - 8494204
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTTGGCTT
5'SS Class:
major
3'SS Sequence:
TGTCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TATTACATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.2
58.1
46
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
82.3
0.73
0.8
73.7
36.9
Minor 5ss
38.7
-1.3
3.3
49.3
46.6
Minor BPS
49.9
0.07
2
75.47
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018287
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028999
8494103 - 8498180
4078