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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8506600_8506797_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8506600 - 8506797
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGACCT
5'SS Class:
major
3'SS Sequence:
TTGCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TCCAGCTGATAT
Flanking Amino Acid:
DTGSSAYVTEAVKVTLDIHL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
61.7
42.9
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
86.7
0.83
0.8
84.9
30
Minor 5ss
36.1
-1.6
3
49.6
46.2
Minor BPS
40.4
-0.6
2.1
54.53
46.6

Associated Gene:

Gene:
DHX40
Ensembl Gene ID:
ENSAPLG00000013368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036339
8505521 - 8518416
12896
ENSAPLT00000033287
8505521 - 8519427
13907
ENSAPLT00000013968
8505521 - 8519519
13999