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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8511274_8511725_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8511274 - 8511725
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGTTT
5'SS Class:
weak_major
3'SS Sequence:
GAATCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TCTTCTCTGACA
Flanking Amino Acid:
AATSLTIEGVRYVVDSGFVK
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
72.1
39.9
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
75.3
0.57
1
65.8
44.8
Minor 5ss
65.1
0.51
2.7
81.8
38.5
Minor BPS
63.8
0.43
1.7
74.9
36.7

Associated Gene:

Gene:
DHX40
Ensembl Gene ID:
ENSAPLG00000013368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036339
8505521 - 8518416
12896
ENSAPLT00000033287
8505521 - 8519427
13907
ENSAPLT00000013968
8505521 - 8519519
13999