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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8512518_8513060_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8512518 - 8513060
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTACTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTCATT
Flanking Amino Acid:
LKCLSVHDVIRFPYLDRPEE
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
66.7
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86
0.81
0.7
82
28.4
Minor 5ss
52.4
0.08
2.4
69.1
41.7
Minor BPS
67.2
0.62
1.9
88.84
36.2

Associated Gene:

Gene:
DHX40
Ensembl Gene ID:
ENSAPLG00000013368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013968
8505521 - 8519519
13999
ENSAPLT00000036339
8505521 - 8518416
12896
ENSAPLT00000033287
8505521 - 8519427
13907