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Intron Name: Anas_platyrhynchos_platyrhynchos_20_8513142_8513835_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8513142 - 8513835

Intron Length:

694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTGCAATAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTGCAA

U12 Branch Point Sequence:

TTTTCCTGCAAT

Flanking Amino Acid:

KQLYQCDAIDRRGHVTRLGE

Intron Amino Acid Position:

272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

83.1

28.4

Major BPS

46.4

-0.2

1.4

54.9

40.8

Major PPT

56.5

0.15

1.1

61.7

38.2

Minor 5ss

34.5

-1.8

3.1

48.5

47.2

Minor BPS

61.1

0.43

2.1

86.48

Associated Gene:

Gene:

DHX40

Ensembl Gene ID:

ENSAPLG00000013368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036339

8505521 - 8518416

12896

ENSAPLT00000033287

8505521 - 8519427

13907

ENSAPLT00000013968

8505521 - 8519519

13999