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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8516731_8517073_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8516731 - 8517073
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ACAAAACTTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAAAA
Flanking Amino Acid:
CAGYFINVARRSAARTFCTM
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
58.2
0.19
1
52.4
41.8
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
54
0.12
1.9
73.93
37.1

Associated Gene:

Gene:
DHX40
Ensembl Gene ID:
ENSAPLG00000013368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036339
8505521 - 8518416
12896
ENSAPLT00000033287
8505521 - 8519427
13907
ENSAPLT00000013968
8505521 - 8519519
13999