Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8517144_8517756_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8517144 - 8517756

Intron Length:

613

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTTGC

5'SS Class:

major

3'SS Sequence:

TTGTATTTTTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATCAACT

Flanking Amino Acid:

SIVYIHPSSTLYNQETRLEW

Intron Amino Acid Position:

455

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

67.3

39.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.3

0.57

1.1

79.5

37.9

Minor 5ss

42.7

-0.8

2.8

58.3

40.4

Minor BPS

67.5

0.63

1.8

89.4

34.6

Associated Gene:

Gene:

DHX40

Ensembl Gene ID:

ENSAPLG00000013368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036339

8505521 - 8518416

12896

ENSAPLT00000033287

8505521 - 8519427

13907

ENSAPLT00000013968

8505521 - 8519519

13999