Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8517986_8519259_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8517986 - 8519259

Intron Length:

1274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCATA

5'SS Class:

strong_major

3'SS Sequence:

CTCCTATCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTTAT

U12 Branch Point Sequence:

TTCCTCCTATCT

Flanking Amino Acid:

KHKEDLKRQCEISEDILNFF

Intron Amino Acid Position:

531

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

79.8

35.3

Major BPS

66.1

0.4

1.3

59.6

46.8

Major PPT

78.2

0.64

0.8

69.4

35.8

Minor 5ss

43.1

-0.8

2.9

54.5

43.9

Minor BPS

49.9

0.07

1.9

73.67

43.1

Associated Gene:

Gene:

DHX40

Ensembl Gene ID:

ENSAPLG00000013368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033287

8505521 - 8519427

13907