Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8537512_8538162_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8537512 - 8538162

Intron Length:

651

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CATTTCCTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

ATTTCCTTCAAG

Flanking Amino Acid:

ELFESFKSFEGLFYFLGSIV

Intron Amino Acid Position:

704

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

23.1

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

71.2

0.48

68.3

37.4

Minor 5ss

40.5

-1.1

2.7

50.7

45.7

Minor BPS

62.2

0.24

71.23

41.5

Associated Gene:

Gene:

CLTC

Ensembl Gene ID:

ENSAPLG00000012095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022160

8529318 - 8551874

22557

ENSAPLT00000012724

8529318 - 8551874

22557