Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8538327_8539604_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8538327 - 8539604

Intron Length:

1278

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCAAAA

U12 Branch Point Sequence:

GAGATCAAAACC

Flanking Amino Acid:

DPERVKNFLKEAKLTDQLPL

Intron Amino Acid Position:

759

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

83.5

28.8

Major BPS

59.3

0.23

65.3

28.1

Major PPT

81.3

0.7

73.6

31.4

Minor 5ss

43.9

-0.7

3.1

65.3

45.8

Minor BPS

43.6

-0.5

1.9

49.72

40.1

Associated Gene:

Gene:

CLTC

Ensembl Gene ID:

ENSAPLG00000012095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022160

8529318 - 8551874

22557

ENSAPLT00000012724

8529318 - 8551874

22557